Mirlabs
Soumya Banerjee
Soumya Banerjee
complex biological systems alliance,
Regular Member
Personal Web Site:
Main page: http://www.mirlabs.net/global/index.php?c=main&a=person&id=1008
Short Biography

Soumya Banerjee has a PhD in Computer Science from the University of New Mexico, USA. He has recently completed a post-doctoral research fellowship at the Max Planck Institute for Molecular Physiology in Germany. Prior to graduate school, he was a software engineer working in the financial services sector for Fortune 500 clients. His work is at the intersection of computer science and biology – he uses tools from computer science to study biological systems and takes inspiration from biological systems to design more efficient computer systems:

1)     He uses computer programs and mathematical models to simulate and study the immune system in order to understand its role in health and disease.

2)     His work also involves taking inspiration from the immune system and suggests how to build distributed systems (consisting of thousands of connected computers) with faster search and response characteristics.

He works closely with scientists from other domains, especially experimentalists and biologists. His work has been recognized with a University of New Mexico Student Award for Innovation in Informatics in 2010. He takes pride in writing industrial-strength software, which he attributes to years of working in industry and skills honed in academia. As of December 2012, he was ranked worldwide within the top 500 on MATLAB Central (an online repository for computer code contributed by users all over the world). He is on the editorial board for the Journal of Communications Engineering and Networks and on the program committee of the International Conference on Artificial Immune Systems.

List of top 5 publications in the last 5 years
1) The Value of Inflammatory Signals in Adaptive Immune Responses, S. Banerjee, D. Levin, M. Moses, F. Koster and S. Forrest. The 10th International Conference on Artificial Immune Systems (ICARIS), 2011, Lecture Notes in Computer Science, Volume 6825/2011, 1-14, DOI: 10.1007/978-3-642-22371-6_1 (pdf) (link) (bibTeX)

2) Biologically Inspired Design Principles for Scalable, Robust, Adaptive, Decentralized Search and Automated Response (RADAR), M. Moses and S. Banerjee,
Proceedings of the 2011 IEEE Conference on Artificial Life:30-37. DOI: 10.1109/ALIFE.2011.5954663. (pdf) (arXiv) (bibTeX)

3) Modular RADAR: An Immune System Inspired Search and Response Strategy for Distributed Systems, S. Banerjee & M. Moses. The 9th International Conference on Artificial Immune Systems (ICARIS), 2010, Lecture Notes in Computer Science, Volume 6209/2010, 116-129DOI: 10.1007/978-3-642-14547-6_10(preprint) (pdf) (arXiv) (link) (bibTeX)

4) Scale Invariance of Immune System Response Rates and Times: Perspectives on Immune System Architecture and Implications for Artificial Immune Systems, S. Banerjee & M. Moses, Swarm Intelligence,Vol. 4(4), pp. 301-318, DOI: 10.1007/s11721-010-0048-2, 2010 (preprint) (pdf) (arXiv) (link) (bibTeX)

5) A Hybrid Agent Based and Differential Equation Model of Body Size Effects on Pathogen Replication and Immune System Response, S. Banerjee & M. Moses. The 8th International Conference on Artificial Immune Systems (ICARIS), Volume 5666-014, 14-18, 2009 (pdf) (arXiv) (link) (bibTeX)
List of top 5 academic activities during the last 5 years


2010 UNM Student Award for Innovation in Informatics (the award is given to a UNM graduate or undergraduate student for the best paper describing innovation or research in the field of biomedical informatics)

            Distinction and 5th rank in Nagpur University (out of 2000 examinees) in Bachelor of Engineering program

            Member of Editorial Board for Journal of Communications Engineering and Networks (JCEN)

            Guest Editor for Journal of Intelligent Learning Systems and Applications

            Program committee member of International Conference on Artificial Immune Systems (ICARIS)     

Reviewer for IEEE Transactions on Systems, Man, and Cybernetics

Reviewer for SIMIODE (Systemic Initiative for Modeling Investigations and Opportunities with Differential Equations)